Application of genomics-assisted breeding for generation of climate resilient crops: Progress and prospects

Chittaranjan Kole; Mehanathan Muthamilarasan; Robert Henry; David Edwards; Rishu Sharma; Michael Terence Abberton; Jacqueline Batley; Alison Bentley; Michael Blakeney; John Bryant; Hongwei Cai; Mehmet Cakir; Leland J. Cseke; James Cockram; Antonio C. Oliveira; Ciro D. Pace; Hannes Dempewolf; Shelby Ellison; Paul Gepts; Andy J. Greenland; Anthony Hall; Kiyosumi Hori; Stephen Hughes; Mike Humphreys; Massimo Iorizzo; Abdelbagi M. Ismail; Athole Marshall; Sean Mayes; Henry T. Nguyen; Francis C. Ogbonnaya; Rodomiro Ortiz; Andrew H. Paterson; Philipp W. Simon; Joe Tohme; Roberto Toberosa; Babu Valliyodan; Rajeev K. Varshney; Stan D. Wullschleger; Masahiro Yano; Manoj Prasad

doi:10.3389/fpls.2015.00563

Application of genomics-assisted breeding for generation of climate resilient crops: Progress and prospects

Chittaranjan Kole, Mehanathan Muthamilarasan, Robert Henry, David Edwards, Rishu Sharma, Michael Terence Abberton, Jacqueline Batley, Alison Bentley, Michael Blakeney, John Bryant, Hongwei Cai, Mehmet Cakir, Leland J. Cseke, James Cockram, Antonio C. Oliveira, Ciro D. Pace, Hannes Dempewolf, Shelby Ellison, Paul Gepts, Andy J. GreenlandAnthony Hall, Kiyosumi Hori, Stephen Hughes, Mike Humphreys, Massimo Iorizzo, Abdelbagi M. Ismail, Athole Marshall, Sean Mayes, Henry T. Nguyen, Francis C. Ogbonnaya, Rodomiro Ortiz, Andrew H. Paterson, Philipp W. Simon, Joe Tohme, Roberto Toberosa, Babu Valliyodan, Rajeev K. Varshney, Stan D. Wullschleger, Masahiro Yano, Manoj Prasad

Department of Life Sciences

Research output: Contribution to journal › Literature Review › peer-review

212 Citations (Scopus)

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Abstract

Climate change affects agricultural productivity worldwide. Increased prices of food commodities are the initial indication of drastic edible yield loss, which is expected to surge further due to global warming. This situation has compelled plant scientists to develop climate change-resilient crops, which can withstand broad-spectrum stresses such as drought, heat, cold, salinity, flood and submergence, and pests along with increased productivity. Genomics appears to be a promising tool for deciphering the stress responsiveness of crop species with adaptation traits or in wild relatives towards identifying underlying genes, alleles or quantitative trait loci. Molecular breeding approaches have been proven helpful in enhancing the stress adaptation of crop plants, and recent advancement in next-generation sequencing along with high-throughput sequencing and phenotyping platforms have transformed molecular breeding to genomics assisted breeding (GAB). In view of this, the present review elaborates the progress and prospects of GAB in improving climate change resilience in crop plants towards circumventing global food insecurity.

Original language	English
Article number	563
Journal	Frontiers in Plant Science
Volume	6
Early online date	11 Aug 2015
DOIs	https://doi.org/10.3389/fpls.2015.00563
Publication status	Published - 2015

Keywords

Climate Change
Crop Improvement
Stress Tolerance
Breeding
Genomics

UN SDGs

This output contributes to the following UN Sustainable Development Goals (SDGs)

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10.3389/fpls.2015.00563Licence: CC BY

Application of genomics-assisted breeding for generation of climate resilient crops: Progress and prospectsFinal published version, 2.18 MBLicence: CC BY

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Kole, C., Muthamilarasan, M., Henry, R., Edwards, D., Sharma, R., Abberton, M. T., Batley, J., Bentley, A., Blakeney, M., Bryant, J., Cai, H., Cakir, M., Cseke, L. J., Cockram, J., Oliveira, A. C., Pace, C. D., Dempewolf, H., Ellison, S., Gepts, P., ... Prasad, M. (2015). Application of genomics-assisted breeding for generation of climate resilient crops: Progress and prospects. Frontiers in Plant Science, 6, Article 563. https://doi.org/10.3389/fpls.2015.00563

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title = "Application of genomics-assisted breeding for generation of climate resilient crops: Progress and prospects",

abstract = "Climate change affects agricultural productivity worldwide. Increased prices of food commodities are the initial indication of drastic edible yield loss, which is expected to surge further due to global warming. This situation has compelled plant scientists to develop climate change-resilient crops, which can withstand broad-spectrum stresses such as drought, heat, cold, salinity, flood and submergence, and pests along with increased productivity. Genomics appears to be a promising tool for deciphering the stress responsiveness of crop species with adaptation traits or in wild relatives towards identifying underlying genes, alleles or quantitative trait loci. Molecular breeding approaches have been proven helpful in enhancing the stress adaptation of crop plants, and recent advancement in next-generation sequencing along with high-throughput sequencing and phenotyping platforms have transformed molecular breeding to genomics assisted breeding (GAB). In view of this, the present review elaborates the progress and prospects of GAB in improving climate change resilience in crop plants towards circumventing global food insecurity.",

keywords = "Climate Change, Crop Improvement, Stress Tolerance, Breeding, Genomics",

author = "Chittaranjan Kole and Mehanathan Muthamilarasan and Robert Henry and David Edwards and Rishu Sharma and Abberton, {Michael Terence} and Jacqueline Batley and Alison Bentley and Michael Blakeney and John Bryant and Hongwei Cai and Mehmet Cakir and Cseke, {Leland J.} and James Cockram and Oliveira, {Antonio C.} and Pace, {Ciro D.} and Hannes Dempewolf and Shelby Ellison and Paul Gepts and Greenland, {Andy J.} and Anthony Hall and Kiyosumi Hori and Stephen Hughes and Mike Humphreys and Massimo Iorizzo and Ismail, {Abdelbagi M.} and Athole Marshall and Sean Mayes and Nguyen, {Henry T.} and Ogbonnaya, {Francis C.} and Rodomiro Ortiz and Paterson, {Andrew H.} and Simon, {Philipp W.} and Joe Tohme and Roberto Toberosa and Babu Valliyodan and Varshney, {Rajeev K.} and Wullschleger, {Stan D.} and Masahiro Yano and Manoj Prasad",

year = "2015",

doi = "10.3389/fpls.2015.00563",

language = "English",

volume = "6",

journal = "Frontiers in Plant Science",

issn = "1664-462X",

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Kole, C, Muthamilarasan, M, Henry, R, Edwards, D, Sharma, R, Abberton, MT, Batley, J, Bentley, A, Blakeney, M, Bryant, J, Cai, H, Cakir, M, Cseke, LJ, Cockram, J, Oliveira, AC, Pace, CD, Dempewolf, H, Ellison, S, Gepts, P, Greenland, AJ, Hall, A, Hori, K, Hughes, S, Humphreys, M, Iorizzo, M, Ismail, AM, Marshall, A, Mayes, S, Nguyen, HT, Ogbonnaya, FC, Ortiz, R, Paterson, AH, Simon, PW, Tohme, J, Toberosa, R, Valliyodan, B, Varshney, RK, Wullschleger, SD, Yano, M & Prasad, M 2015, 'Application of genomics-assisted breeding for generation of climate resilient crops: Progress and prospects', Frontiers in Plant Science, vol. 6, 563. https://doi.org/10.3389/fpls.2015.00563

TY - JOUR

T1 - Application of genomics-assisted breeding for generation of climate resilient crops: Progress and prospects

AU - Kole, Chittaranjan

AU - Muthamilarasan, Mehanathan

AU - Henry, Robert

AU - Edwards, David

AU - Sharma, Rishu

AU - Abberton, Michael Terence

AU - Batley, Jacqueline

AU - Bentley, Alison

AU - Blakeney, Michael

AU - Bryant, John

AU - Cai, Hongwei

AU - Cakir, Mehmet

AU - Cseke, Leland J.

AU - Cockram, James

AU - Oliveira, Antonio C.

AU - Pace, Ciro D.

AU - Dempewolf, Hannes

AU - Ellison, Shelby

AU - Gepts, Paul

AU - Greenland, Andy J.

AU - Hall, Anthony

AU - Hori, Kiyosumi

AU - Hughes, Stephen

AU - Humphreys, Mike

AU - Iorizzo, Massimo

AU - Ismail, Abdelbagi M.

AU - Marshall, Athole

AU - Mayes, Sean

AU - Nguyen, Henry T.

AU - Ogbonnaya, Francis C.

AU - Ortiz, Rodomiro

AU - Paterson, Andrew H.

AU - Simon, Philipp W.

AU - Tohme, Joe

AU - Toberosa, Roberto

AU - Valliyodan, Babu

AU - Varshney, Rajeev K.

AU - Wullschleger, Stan D.

AU - Yano, Masahiro

AU - Prasad, Manoj

PY - 2015

Y1 - 2015

N2 - Climate change affects agricultural productivity worldwide. Increased prices of food commodities are the initial indication of drastic edible yield loss, which is expected to surge further due to global warming. This situation has compelled plant scientists to develop climate change-resilient crops, which can withstand broad-spectrum stresses such as drought, heat, cold, salinity, flood and submergence, and pests along with increased productivity. Genomics appears to be a promising tool for deciphering the stress responsiveness of crop species with adaptation traits or in wild relatives towards identifying underlying genes, alleles or quantitative trait loci. Molecular breeding approaches have been proven helpful in enhancing the stress adaptation of crop plants, and recent advancement in next-generation sequencing along with high-throughput sequencing and phenotyping platforms have transformed molecular breeding to genomics assisted breeding (GAB). In view of this, the present review elaborates the progress and prospects of GAB in improving climate change resilience in crop plants towards circumventing global food insecurity.

AB - Climate change affects agricultural productivity worldwide. Increased prices of food commodities are the initial indication of drastic edible yield loss, which is expected to surge further due to global warming. This situation has compelled plant scientists to develop climate change-resilient crops, which can withstand broad-spectrum stresses such as drought, heat, cold, salinity, flood and submergence, and pests along with increased productivity. Genomics appears to be a promising tool for deciphering the stress responsiveness of crop species with adaptation traits or in wild relatives towards identifying underlying genes, alleles or quantitative trait loci. Molecular breeding approaches have been proven helpful in enhancing the stress adaptation of crop plants, and recent advancement in next-generation sequencing along with high-throughput sequencing and phenotyping platforms have transformed molecular breeding to genomics assisted breeding (GAB). In view of this, the present review elaborates the progress and prospects of GAB in improving climate change resilience in crop plants towards circumventing global food insecurity.

KW - Climate Change

KW - Crop Improvement

KW - Stress Tolerance

KW - Breeding

KW - Genomics

UR - http://hdl.handle.net/2160/30344

U2 - 10.3389/fpls.2015.00563

DO - 10.3389/fpls.2015.00563

M3 - Literature Review

SN - 1664-462X

VL - 6

JO - Frontiers in Plant Science

JF - Frontiers in Plant Science

M1 - 563

ER -

Application of genomics-assisted breeding for generation of climate resilient crops: Progress and prospects

Abstract

Keywords

UN SDGs

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Athole Marshall

Comparative population genomics of red clover domestication and improvement

Roots for the Future- A systematic approach to root design - SUREROOT

Introgression and wide hybrid genetics, genomics and germplasm development in Lolium/Festuca (Festulolium) and white clover

Cite this

Application of genomics-assisted breeding for generation of climate resilient crops: Progress and prospects

Abstract

Keywords

UN SDGs

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Other files and links

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Profiles

Athole Marshall

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Comparative population genomics of red clover domestication and improvement

Roots for the Future- A systematic approach to root design - SUREROOT

Introgression and wide hybrid genetics, genomics and germplasm development in Lolium/Festuca (Festulolium) and white clover

Cite this